Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKLKLRLTHLWYKLLMKLGLKSDEVYYIGGSEALPPPLSKDEEQVLLMKLPNGDQAARAILIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYAS--------RCIENE-----ILMYL--------RRNNKIRSEVSFD-------EPLNIDWDGNE-----------LLLSDVLGTDDDIITKD------IEANVDKKL-------LKKALEQLNEREKQIMELRFGLVGEEEKTQKDVADMMGISQSYISRLEKRIIKRLRKEFNKMV
4OIR Chain:F ((201-429))-------------------------------------------------------EAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK-------


General information:
TITO was launched using:
RESULT:

Template: 4OIR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 408 -55810 -136.79 -315.31
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain F : 0.70

3D Compatibility (PKB) : -136.79
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.607

(partial model without unconserved sides chains):
PDB file : Tito_4OIR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4OIR-query.scw
PDB file : Tito_Scwrl_4OIR.pdb: