Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDMNEHRNRRLKLIMISATFGGLLFGYDTGVINGALPFM----ARPDQLDLTPVTE--GLVTSILLLGAAFGALLCGRLADRYGRRKMILNLSFLFFLASLGTA----------------LAPNVFIMAVFRFLLGLAVGGASAMVPAFLAEMAPHEKRGRMVTQNELMIVGGQFLAYVFNAILG----VTMANTGHVWRYMLVICAVPAIMLFASMLKVPESPRWLISKGKNSEALRVLKQIREDKRAEAECREIQEAVEKDTALEKASLKDFSTPWLRRLLWIGIGV-------AIVNQITGVNSIMYYGTQILKESGFGTKAALIANIGNGLISVIAVIFGIWLVGKVRRRPILLIGLAGTTTALLLIAIFSIVLDGSMALPYVVLSLTVLF-LAFMQGCVGPVTWLVIAEIFPQRLRGLGSGISVFFLWILNFVIGFAFPILLSSVGLSFTFFIFVALGVLAIGFVYKFMPETKGRTLEELEEHFRSRHDHNTPEQSVIEV
4JA4 Chain:C ((9-475))---------YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG-WRYMFASECIPALLFLMLLYTVPESPRWLM----QEQAEGILRKIMGNTLATQAVQEIKHSLDHG--------------------MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV------------LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG-----MAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN---GFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE-------------------


General information:
TITO was launched using:
RESULT:

Template: 4JA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1863 -229363 -123.11 -576.29
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain C : 0.76

3D Compatibility (PKB) : -123.11
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.337

(partial model without unconserved sides chains):
PDB file : Tito_4JA4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JA4-query.scw
PDB file : Tito_Scwrl_4JA4.pdb: