Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSEEKIYDVIIIGAGPAGMTAAVYTSRANLSTLMIERGIPGGQMANTEDVENYPGFESIL-GPELSNKMFEHAKKFGAEYAYGDIKEV-IDGKEYKVVKAGSKEYKARAVIIAAGAEYKKIGVPGEKELGGRGVSYCAVCDGAFFKGKELVVVGGGDSAVEEGVYLTRFASKVTIVHRRDKLRAQSILQARAFD---NEKVDFLWNKTVKEIHEENGKVGNVTLVDTVTGEESE-FKTDGVFIYIGMLPLSKPFENLGITNEEGYIETN-----DRMETKVEGIFAAGDIREKSLRQIVTATGDGSIAAQSVQHYVEELQETLKTLK
1TDF Chain:A ((8-316))--------LLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRL-NGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQ-LELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGL--------


General information:
TITO was launched using:
RESULT:

Template: 1TDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1706 -30659 -17.97 -102.88
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.81

3D Compatibility (PKB) : -17.97
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.435

(partial model without unconserved sides chains):
PDB file : Tito_1TDF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1TDF-query.scw
PDB file : Tito_Scwrl_1TDF.pdb: