Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGHYSHSDIEEAVKSAKKEGLKDYLYQEPHGKKRSHKKSHRTHKKSRSHKKSYCSHKKSRSHKKSFCSHKKSRSHKKSYCSHKKSRSHKKSYRSHKKSRSYKKSYRSYKKSRSYKKSCRSYKKSRSYKKSYCSHKKKSRSYKKSCRTHKKSYRSHKKYYKKPHHHCDDYKRHDDYDSKKEYWKDGNCWVVKKKYK
1JFI Chain:B ((68-87))--TISPEHVIQALESL---GFGSYI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1JFI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 21 -4147 -197.45 -207.33
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain B : 0.72

3D Compatibility (PKB) : -197.45
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.567

(partial model without unconserved sides chains):
PDB file : Tito_1JFI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JFI-query.scw
PDB file : Tito_Scwrl_1JFI.pdb: