Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHPCATDPELWFGYPDDDGSDGAAKARAYERSATQARIQCLRRCPLLQQRRCAQHAVEHRVEYGVWAGIKLPGGQYRKREQL-AAAHDVLRRIAGGEINSRQLPDNAALLARNEGLEVTPVPGVVVHLPIAQVGPQPAA
1Q8R Chain:A ((1-118))
-----MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECH----MPDRRRRDLDNLQKAAFDALTK-AG-------FWLDDAQVVDYRVVKMPVTKGGRLELTITEMG-----
General information:
TITO was launched using:
RESULT:
Template:
1Q8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30884 for 823 contacts (-37.5/contact) +
2D Compatibility (PS) -12649 + (NN) -6675 + (LL) 1132
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -52376.0 ( -63.64 by residue)
QMean score : 0.233
(partial model without unconserved sides chains):
PDB file :
Tito_1Q8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q8R-query.scw
PDB file :
Tito_Scwrl_1Q8R.pdb
: