Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
4DUZ Chain:R ((19-85))
-----------KAKVKATLGEFDLR-----DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKL-
General information:
TITO was launched using:
RESULT:
Template:
4DUZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4329 for 408 contacts (-10.6/contact) +
2D Compatibility (PS) -6977 + (NN) -1382 + (LL) 1044
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -16144.0 ( -39.57 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_4DUZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DUZ-query.scw
PDB file :
Tito_Scwrl_4DUZ.pdb
: