Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCADAQPSGSVGLLGRNCPTATTRWRRAGEGLTAADTIEVKLWAGKPRLHPLVPKRAVGVLLAVAHGQVAKTPSATRAIAFRHVRL--MRVRWICAGNRGRKHKRRCTTQYRSTQASKLQLHFKLRQTLNRLGGLQAMVSACG
1BM9 Chain:A ((3-122))
----EEKRSSTGFLVKQRAFLKLYMITMTE---------------QERLYGL----KLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF
General information:
TITO was launched using:
RESULT:
Template:
1BM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7247 for 715 contacts (10.1/contact) +
2D Compatibility (PS) -12815 + (NN) -8246 + (LL) 1736
1D Compatibility (HY) -800 + (ID) 1000
Total energy: -13878.0 ( -19.41 by residue)
QMean score : 0.108
(partial model without unconserved sides chains):
PDB file :
Tito_1BM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BM9-query.scw
PDB file :
Tito_Scwrl_1BM9.pdb
: