Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRRTGQRWRGTLPGRRPWTRPAPATCRRHLAFVELRHYFARVMSSAIGSVARWIVPLLGVAAVASIGVIADPVRVVRAPALILVDAANPLAGKPFYVDP--ASAAMVAARNANPP--NAELTSVANTPQSYWLDQAFPPATVGGTVARYTGAAQAAGAMPV--LTLYGIPHRDCGSYASGGFATGTD-----YRGWIDAVASGLGSSPATIIV---EPDALA-------MADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDAGHSRWL--------SAEAMAARLNDVG-VGRARGFSLNVSNFY-----TTD---------EEIGYGEAISGLTNG----SHYVIDTSRNGAGPAPDAPLNWCNPSGRALGAPPTTATAGAHADAYLWIKRPGESDGT-----------CGRGE-----PQAGRFVSQYAIDLAHNAGQ |
| 3VOG Chain:A ((8-359)) | ----------------------------------------------------------------------------------------NPFEGYDIYLSPYYAEEVEAAAAMIDDPVLKAKALKVKEIPTFIWFDVVRKTPDLGRYLADATAIQQRTGRKQLVQIVVYDLPDRDCAAAASNGEFSLADGGMEKYKDYVDRLASEIRKYPDVRIVAVIEPDSLANMVTNMNVAKCRGAEAAYK--EGVIYALRQLSA-LGVYSYVDAGHAGWLGWNANLAPSARLFAQIYKDAGRSAFIRGLATNVSNYNALSATTRDPVTQGNDNYDELRFINALAPLLRNEGWDAKFIVDQGRSGVQNIRQEWGNWCNVYGAGFGMRPTLNTPSSAIDAIVWIKPGGEADGTSDTSAPRYDTHCGKSDSHKPAPEAGTWFQEYFVNLVKNAN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VOG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -70694 for 2332 contacts (-30.3/contact) +
2D Compatibility (PS) -31550 + (NN) -23189 + (LL) 7648
1D Compatibility (HY) -16800 + (ID) 5050
Total energy: -139635.0 ( -59.88 by residue)
QMean score : 0.434
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