Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNANFSILVDFAAGGLVLASVLIVWRRDLRAIVRLLAWQGAALAAIPLLRGIRDNDRALIAVGIAVLALRALVLPWLLARAVGAEAAAQREATPLVNTASSLLITAGLTLTAFAITQPVVNLEPGVTINAVPAAFAVVLIALFVMTTRLHAVSQAAGFLMLDNGIAATAFLLTAGVPLIVELGASLDVLFAVIVIGVLTGRLRRIFGDADLDKLRELRD
2RO1 Chain:A ((1-189))
--SATICRVCQKPGDLVMCNQCEFCFHLD---------------CHLPALQDVPGEEWSCSLCHVLPDLKEE--------DGSLSLDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRPLHQL---ATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKL--TEDKADVQSIIGLQRFFETRMNEAFGDTKFSAVLVEP-
General information:
TITO was launched using:
RESULT:
Template:
2RO1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165378 for 1579 contacts (-104.7/contact) +
2D Compatibility (PS) -18107 + (NN) 8538 + (LL) 3508
1D Compatibility (HY) 2400 + (ID) 800
Total energy: -169839.0 ( -107.56 by residue)
QMean score : 0.215
(partial model without unconserved sides chains):
PDB file :
Tito_2RO1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RO1-query.scw
PDB file :
Tito_Scwrl_2RO1.pdb
: