Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGT-QCVLDVGCGDGLLAARLARRIP-YVTAVDIDAPVLRRAQTRF---ANAPIRWLHADIMTAELPNAGFDAVVSNAALHHIEDTRTALSRLGGLVTPGGTLAVVTFVTPSLRNGLWHLTSWVACGMANRVKGKWEHSAPIKWPPPQTLHELRSHVRALLPGACIRRLLYGRVLVTWRAPV
4KRH Chain:A ((207-327))
----WNQNL---AILKRFGPMKTGQRMLDIGVGIGGGARQAASEFGLQVHGVDLSTNMLAVALERVHKEKDARVTYAVCDACEYEFEPNSFDYVFSRDCIQHIKDTDKLFSRIYRALKPGGKVLITMY--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4KRH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101675 for 887 contacts (-114.6/contact) +
2D Compatibility (PS) -12876 + (NN) -7898 + (LL) 5332
1D Compatibility (HY) -8800 + (ID) 1850
Total energy: -127767.0 ( -144.04 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_4KRH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KRH-query.scw
PDB file :
Tito_Scwrl_4KRH.pdb
: