Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTLAGGP-FDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAESDDADAVAARRTLQM--MGEHPGLDATAIQTVGRKGWDGFALALVR
2GPY Chain:A ((46-214))
--------------------------------------------------LLHLLKMAAPAR-ILEIGTAIGYSAIRMAQ-ALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVL-F---------------------QWLLEHPQYD-TRIFPVG----DGIAISIKR
General information:
TITO was launched using:
RESULT:
Template:
2GPY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131053 for 1098 contacts (-119.4/contact) +
2D Compatibility (PS) -15724 + (NN) -6827 + (LL) 4552
1D Compatibility (HY) -12000 + (ID) 2700
Total energy: -163752.0 ( -149.14 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2GPY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GPY-query.scw
PDB file :
Tito_Scwrl_2GPY.pdb
: