Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDQRWLIDKSALVRL-TDSPD-MEIWSNRIERGLVHITGVTRLEVGFSAECGE----IARREFREPPLSAMPVEYLTPRIEDRALEVQTLLADRGHHRGPSIPDLLIAATAELSGLTVLHVD-KDFDAIAALTGQKTERLTHRPPSA
5ECD Chain:A ((8-130))
---LKFMLDTNICIFTIKNKPASVRERFNL-NQGKMCISSVTLMELIYGAEKSQMPERNLAVIEG-FVS-RIDVLDYDAAAATHTGQIRAELARQG--RPVGPFNQMIAGHARSRGLIIVTNNTREFERVG-----------------
General information:
TITO was launched using:
RESULT:
Template:
5ECD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33921 for 853 contacts (-39.8/contact) +
2D Compatibility (PS) -12604 + (NN) -973 + (LL) 1400
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -50348.0 ( -59.02 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_5ECD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5ECD-query.scw
PDB file :
Tito_Scwrl_5ECD.pdb
: