Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEP--GGRELDLWLHR--AAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDFQHTDIATVALP
1V8P Chain:A ((30-144))
YLVDASALYALAAHYDKWI---KH---REKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLE--DPPLDEVLRVAVE-----R--GLTFYDASYAYVAESSGLVLVTQDRELLAKTKG-----
General information:
TITO was launched using:
RESULT:
Template:
1V8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40992 for 794 contacts (-51.6/contact) +
2D Compatibility (PS) -11906 + (NN) -6013 + (LL) 1592
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -59669.0 ( -75.15 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1V8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8P-query.scw
PDB file :
Tito_Scwrl_1V8P.pdb
: