Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR-------------------------------GRADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVFARALRALGK
1ZIO Chain:A ((1-213))
MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLG-
General information:
TITO was launched using:
RESULT:
Template:
1ZIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61424 for 1392 contacts (-44.1/contact) +
2D Compatibility (PS) -20432 + (NN) -17128 + (LL) 64
1D Compatibility (HY) -18400 + (ID) 4200
Total energy: -121520.0 ( -87.30 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_1ZIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZIO-query.scw
PDB file :
Tito_Scwrl_1ZIO.pdb
: