Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMIVASVATGALATIARWLLTRRSVILREVGPETTPAAPARTAELGLSGAGPTVVHFRAPGCAPCDR---VRRGVGDVCADLGDVAHIEVDLDSNPQAARRFSVLSLPTTLIFDVDGRQRYRTSGVPKAADLRSALKPLLA
1NSW Chain:A ((14-104))
------------------------------------------------IQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVD--ENPETTSQFGIMSIPTLILFK-GGRPVKQLIGYQPKEQLEAQLADVL-
General information:
TITO was launched using:
RESULT:
Template:
1NSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48871 for 599 contacts (-81.6/contact) +
2D Compatibility (PS) -9494 + (NN) -2457 + (LL) 4800
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -65072.0 ( -108.63 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1NSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NSW-query.scw
PDB file :
Tito_Scwrl_1NSW.pdb
: