Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRR--SVGQGAAMLKGEK---RSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
1L2B Chain:A ((134-273))
---------LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVR---------GTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
1L2B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67122 for 935 contacts (-71.8/contact) +
2D Compatibility (PS) -13393 + (NN) -7193 + (LL) 1932
1D Compatibility (HY) -6400 + (ID) 2300
Total energy: -94476.0 ( -101.04 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1L2B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2B-query.scw
PDB file :
Tito_Scwrl_1L2B.pdb
: