Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSADLTAHAR-IREAAIEQFGRHGF-GVGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKSNDPTTWLAQMAEIESYAPLMAYLVRSMQSGGELAKMLWQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQMHENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
3LOC Chain:A ((12-65))
-RSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEAL---------------------------------------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3LOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34514 for 319 contacts (-108.2/contact) +
2D Compatibility (PS) -6065 + (NN) -4740 + (LL) 12344
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -38125.0 ( -119.51 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_3LOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOC-query.scw
PDB file :
Tito_Scwrl_3LOC.pdb
: