Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKPTSAGQADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQ-LTDAEMLAEWM-NRPHLAAAWEY-D-WPASRWRQHLNAQLEGTYSLPLIGS--WHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTT----N--RRMALYALEAPTTAA
3PZJ Chain:A ((33-206))
------------------------------------AIRGEAVSLQPLDAPRHGAALFRLFAGDDSHWEHLPYGPFEDEDAFITWLALTVAQSDTALYVVCAKDSDQALGFLGYRQMVQ---------AHGAIEIGHVNFSPALRRTRLATEAVFLLLKTAF--ELGYRRCEWRCDSRNAASAAAARRFGFQFEGTLRQAMVVKRRNRDTHVFSMLDGEWD-
General information:
TITO was launched using:
RESULT:
Template:
3PZJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81847 for 1190 contacts (-68.8/contact) +
2D Compatibility (PS) -16977 + (NN) -5492 + (LL) 3168
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -104448.0 ( -87.77 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_3PZJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PZJ-query.scw
PDB file :
Tito_Scwrl_3PZJ.pdb
: