Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDGTVTGDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
3R5W Chain:O ((4-112))
----------------------------------KIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP-----
General information:
TITO was launched using:
RESULT:
Template:
3R5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56527 for 799 contacts (-70.7/contact) +
2D Compatibility (PS) -12141 + (NN) -6780 + (LL) 1284
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -83314.0 ( -104.27 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3R5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5W-query.scw
PDB file :
Tito_Scwrl_3R5W.pdb
: