Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHSRLIGALTVVAIIVTACGSQPKSQPAVAPTGDAAAATQVPAGQTVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVA--ASHPEVTFVGVA-GLDQVPAMQEFVNKYP---VKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGN-VDVVRGRMSQDELTRRVTALTSR
4EVM Chain:A ((54-187))
----------------------------------------------------DFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL---
General information:
TITO was launched using:
RESULT:
Template:
4EVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84174 for 919 contacts (-91.6/contact) +
2D Compatibility (PS) -13486 + (NN) -2146 + (LL) 3836
1D Compatibility (HY) -7600 + (ID) 1850
Total energy: -105420.0 ( -114.71 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4EVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EVM-query.scw
PDB file :
Tito_Scwrl_4EVM.pdb
: