Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLATIDKFAYEKSMLINVGDEKGTLLDAAVRRADPALALELGTYLGYGALRIAR-AAPEARVYSVELAEANASNARRIWAHAGVDDRVVCVVGTIGDGGRTLDALTEHGFATGTLDFVFLDHDKKAYLPDLQSILDRGWLHPGSIVVADNVRVPGAPKYRAYMRRQQGMSWNTIEHKTHLEYQTLVPDLVLESEYLG
4PYM Chain:A ((25-204))
VLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD----LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSS--SFECTHYSSYLEYMKVV-----------
General information:
TITO was launched using:
RESULT:
Template:
4PYM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95199 for 1395 contacts (-68.2/contact) +
2D Compatibility (PS) -19547 + (NN) -6066 + (LL) 448
1D Compatibility (HY) -17600 + (ID) 3500
Total energy: -141464.0 ( -101.41 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4PYM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PYM-query.scw
PDB file :
Tito_Scwrl_4PYM.pdb
: