Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTRPREIYLATAVSIGILLSLIAPLGPPLARADGT-SQLAELVDAAAERLEVADPVAAFKWRAQLPIEDSGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEYSRFSDWKLNPASAPPEPPDLSASRSAIDSLNNRMLSQIWSHWSLLSAPSCAAQLDRAKRDIVRSRHLDSLYQRALTTATQSYCQALPPA
4OJ7 Chain:E ((12-171))
----------------------------------GDDTALTNLVALASQRLALAEPVAHWKWINRKPISDPPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATWRATHGPEGPAPDLATSTRPQLDRLTQSLIAALARVAPLRDAPDCPSRLARSIANWKTLTRYDSAQKDALGTALSHVC------
General information:
TITO was launched using:
RESULT:
Template:
4OJ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38594 for 1154 contacts (-33.4/contact) +
2D Compatibility (PS) -17389 + (NN) -11081 + (LL) 3036
1D Compatibility (HY) -8000 + (ID) 2400
Total energy: -74428.0 ( -64.50 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_4OJ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OJ7-query.scw
PDB file :
Tito_Scwrl_4OJ7.pdb
: