Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTTMIKTAVAVVAMAAIATFAAPVALAAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPGYPVAGQVWEAT---ATVNAIRGSVTPAVSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYFDVTGPSPTIVAMNNGMEDLLIWEP
1MOL Chain:A ((1-94))
---------------------------------------------------GEWEIIDIGPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEREIKGYEYQLYVYAS--DKLFRADISEDYKTRGRKLLRFNGPVPPP---------------
General information:
TITO was launched using:
RESULT:
Template:
1MOL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27797 for 609 contacts (-45.6/contact) +
2D Compatibility (PS) -9508 + (NN) 174 + (LL) 6044
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -36387.0 ( -59.75 by residue)
QMean score : 0.114
(partial model without unconserved sides chains):
PDB file :
Tito_1MOL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MOL-query.scw
PDB file :
Tito_Scwrl_1MOL.pdb
: