Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTR--FGDFKPREHNLLAIPITETVFECHAGGHIYDRGVDGSVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGW-------ESVADGVDSEAGWPLYL-RRYTDLLCIQVQP
1XN6 Chain:A ((5-143))
---NTLNDIKQTIVFNASIQKVWSVVSTAEGIASWFMP-N----------DFVLEVGHEFHVQSPFG--PSPCKVLEIDEPNHLSFSWDTD-----------GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRM--SGGWVAIVNEKLKKVVEG----
General information:
TITO was launched using:
RESULT:
Template:
1XN6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63651 for 884 contacts (-72.0/contact) +
2D Compatibility (PS) -13598 + (NN) -1281 + (LL) 2200
1D Compatibility (HY) -9200 + (ID) 1150
Total energy: -86680.0 ( -98.05 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_1XN6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XN6-query.scw
PDB file :
Tito_Scwrl_1XN6.pdb
: