Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAV-RVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHL-AADLLVALDRNHARLLRQLGVEA--ARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
1D2A Chain:A ((7-148))
----ISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDPWYGDIQDFEYNFKQI---------------------
General information:
TITO was launched using:
RESULT:
Template:
1D2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89182 for 1104 contacts (-80.8/contact) +
2D Compatibility (PS) -15101 + (NN) -7726 + (LL) 668
1D Compatibility (HY) -11600 + (ID) 2350
Total energy: -125291.0 ( -113.49 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_1D2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D2A-query.scw
PDB file :
Tito_Scwrl_1D2A.pdb
: