Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRR-WSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRWDASASDCEYCDVTRR
4E8B Chain:A ((5-244))
----RIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQD-----EGLKLNLHPRASNSINTL-PLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFGDLGL-------------
General information:
TITO was launched using:
RESULT:
Template:
4E8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151934 for 1892 contacts (-80.3/contact) +
2D Compatibility (PS) -25422 + (NN) -6684 + (LL) 2272
1D Compatibility (HY) -8400 + (ID) 2900
Total energy: -193068.0 ( -102.04 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_4E8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E8B-query.scw
PDB file :
Tito_Scwrl_4E8B.pdb
: