Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQVTDMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ
3MT6 Chain:R ((33-204))
-------------------IYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILT---------
General information:
TITO was launched using:
RESULT:
Template:
3MT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130228 for 1331 contacts (-97.8/contact) +
2D Compatibility (PS) -19393 + (NN) -10766 + (LL) 1456
1D Compatibility (HY) -20000 + (ID) 4800
Total energy: -183731.0 ( -138.04 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3MT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MT6-query.scw
PDB file :
Tito_Scwrl_3MT6.pdb
: