Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKAPQKSVADFWFDPLCPWCWITSRWIL-EV----AKVRDIEVNFHVMSLAILNENRDDLPEQYREGMARAWGPVRVAIAAEQAHGAKVLDPLYTAMGNRIHNQGNH-E-LDEVITQSLADAGL-PAELAKAATSD-AYDNALRKSHHAGMDAVGEDVGTPTIHVNGVAFFGPVLSKIPRGEEAGKLWDASVTFASYPHFFELKRTRTEPPQFD
4PWO Chain:A ((72-244))
-VGAVDAPLVITEFSDFECPFCARWSNQTEPTLMEEYVSKGLVRIEWNDLPVNG----------------EHALAAAKAGRAAAAQ-G--KFDEFRKALFEASRNVSGHPNNTLKDFERFARNAGVKDMERFSREAQDSTYDEVLAKAADYA-HGLG-VSGTPAFVVGTQY-----ISGAQPTEEFIKVIESELKKSPTF----------------
General information:
TITO was launched using:
RESULT:
Template:
4PWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83840 for 1276 contacts (-65.7/contact) +
2D Compatibility (PS) -17426 + (NN) -4804 + (LL) 2532
1D Compatibility (HY) -400 + (ID) 1550
Total energy: -105488.0 ( -82.67 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_4PWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PWO-query.scw
PDB file :
Tito_Scwrl_4PWO.pdb
: