Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVAD----GKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDG-DELSYSLQMRAVGQPLQDHLAAVLHRQR
2FWV Chain:A ((57-225))
EGADLNNALLALLPLVGVWRGEGEGRGPDG-DYRFGQQIVVSHDGGDYLNWESRSWRLTATGDYQEPGLREAGFWRFVA---IELLLAHSAGYVELFYGRPRT-QSSWELV--T---DALARSRSGVLVGGAKRLYGIVEGGDLAYVEERVDADGGLVPHLSARLSRFV
General information:
TITO was launched using:
RESULT:
Template:
2FWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49695 for 1085 contacts (-45.8/contact) +
2D Compatibility (PS) -16307 + (NN) -4517 + (LL) 212
1D Compatibility (HY) -8800 + (ID) 2250
Total energy: -81357.0 ( -74.98 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_2FWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FWV-query.scw
PDB file :
Tito_Scwrl_2FWV.pdb
: