Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADKSKRPPRFDLKSADGSFGRLVQIGGTTIVVVFAVVLVFYIVTSRDDKKDGVAGPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
4JR4 Chain:B ((28-223))
----------------------------------------------------------DAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATAT-
General information:
TITO was launched using:
RESULT:
Template:
4JR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141467 for 1622 contacts (-87.2/contact) +
2D Compatibility (PS) -21346 + (NN) -7686 + (LL) 3048
1D Compatibility (HY) -24800 + (ID) 9800
Total energy: -202051.0 ( -124.57 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_4JR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JR4-query.scw
PDB file :
Tito_Scwrl_4JR4.pdb
: