Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLLDAHIPQLIASHTAFAAKAGLMRHTIGQAEQQAMSAQAFHQGESAAAFQGAHARFVAAAAKVNTLLDIAQANLGEAAGTYVAADAAAASSYTGF
4W4K Chain:B ((20-97))
------GPDSMLAAARAWRSLDVEMTAVQRSFNRTLLSLMDAWAGPVVMQLMEAAKPFVRWLTDLCVQLSEVERQIHEIVRAYE-------------
General information:
TITO was launched using:
RESULT:
Template:
4W4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13456 for 425 contacts (-31.7/contact) +
2D Compatibility (PS) -8879 + (NN) -6398 + (LL) 1436
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -29847.0 ( -70.23 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_4W4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W4K-query.scw
PDB file :
Tito_Scwrl_4W4K.pdb
: