Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGGRRRGRSGSG--RGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT
4YGB Chain:A ((19-140))
-------------------------PHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYA--
General information:
TITO was launched using:
RESULT:
Template:
4YGB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10870 for 418 contacts (26.0/contact) +
2D Compatibility (PS) -8636 + (NN) -1760 + (LL) 1860
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -2616.0 ( -6.26 by residue)
QMean score : 0.080
(partial model without unconserved sides chains):
PDB file :
Tito_4YGB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YGB-query.scw
PDB file :
Tito_Scwrl_4YGB.pdb
: