Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MDNQRQYPRTPLKCR----IRISHPLFGELM----------AQTRDLSDTGVYVKHPDLTQLPTGSVVT-GQVQDLPIDAPILQMEVVRVDAE--------GVGLRFLSEA
1QUN Chain:B ((159-279))
GGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNG-TIIPANNTVSLGAVGTSAVSLG-LTANYARTGGQVTAGNVQSIIGVTFVYQ-
General information:
TITO was launched using:
RESULT:
Template:
1QUN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26133 for 442 contacts (-59.1/contact) +
2D Compatibility (PS) -9284 + (NN) -4469 + (LL) 524
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -42162.0 ( -95.39 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_1QUN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QUN-query.scw
PDB file :
Tito_Scwrl_1QUN.pdb
: