Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISSFRAQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLDFLLEDLPDVWLDRLAGTWPGPNTWLVPHQERLPEWVTGVH---DSVAVRVTDHPLVQELCHLTG-PLISTSANPAGRPAARTRLRVEQYFHDELDAILGGALGGRR------NPSLIRDLVTGQVIRPA
3TSQ Chain:A ((122-283))
--------------KMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRPAKPLAVMLP--------VADGLPDAARQLL--TTPAAPIVLV-DKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN---EQALED-LQGIADGFLIHNRDIVQRMDDSVVRE--SGEMLRRS
General information:
TITO was launched using:
RESULT:
Template:
3TSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87334 for 1161 contacts (-75.2/contact) +
2D Compatibility (PS) -16646 + (NN) -12667 + (LL) 3116
1D Compatibility (HY) -8400 + (ID) 2400
Total energy: -124331.0 ( -107.09 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_3TSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TSQ-query.scw
PDB file :
Tito_Scwrl_3TSQ.pdb
: