Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKANGVPAYTLEIVDKGS------------VTDKKVVGTCDGGT--KEIVYQRG
3SOP Chain:A ((155-221))
---------------------LEEKSEFKQRVRKELEVNGIEFYPQKEF---LEDKTENDKIRQESMPFAVVGSDKEYQVNGKRVLGRK
General information:
TITO was launched using:
RESULT:
Template:
3SOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4084 for 188 contacts (21.7/contact) +
2D Compatibility (PS) -5614 + (NN) -3052 + (LL) 2224
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -4458.0 ( -23.71 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_3SOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SOP-query.scw
PDB file :
Tito_Scwrl_3SOP.pdb
: