Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVLALRLTALAALVISVSGCVMEAYGSRARSDAQSWIGLPIQDVIKRFGEPERVTGDAARQKYVWKEYENYSHDYDYTYYEQGHGNTPNSSVLNQKTGTANQSGYYTCIYEFFADASGRVVDATARGECR
1AK1 Chain:A ((122-155))
----------------------VQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPW
General information:
TITO was launched using:
RESULT:
Template:
1AK1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1868 for 137 contacts (-13.6/contact) +
2D Compatibility (PS) -3514 + (NN) 659 + (LL) 2476
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -5247.0 ( -38.30 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_1AK1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AK1-query.scw
PDB file :
Tito_Scwrl_1AK1.pdb
: