Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKGELRLETRDGAQSTRVLEGEAAGCLMNIIHR-LIAG--AEPVEALLFHAGVEGMPVGLGERGEMPDA
3EBR Chain:A ((40-117))
-----------------------------------------------RGETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK-EH---DWVAHAGSVVYETASTRHTPQSAYAEGPDIITFNIVAGELLYLDDKDNIIAVENW
General information:
TITO was launched using:
RESULT:
Template:
3EBR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33631 for 461 contacts (-73.0/contact) +
2D Compatibility (PS) -7829 + (NN) 3464 + (LL) 1888
1D Compatibility (HY) 2400 + (ID) 600
Total energy: -34308.0 ( -74.42 by residue)
QMean score : 0.202
(partial model without unconserved sides chains):
PDB file :
Tito_3EBR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EBR-query.scw
PDB file :
Tito_Scwrl_3EBR.pdb
: