Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRKTLDDTSKFLSYVLRHQPEAIGLTLDGEGWADIDALIAGAARDG-----RALDRMLLGAVVENNDKKRFALSADGQRIRAVQGHSHAAVAIAYAPAVPPAVLYHGTASRFLDSIRERGLVPGSRHHVHLSARRATALEVGRRYGSPVLLEIDARDMHLAGHLFHQAENGVWLTERVPVRFIREA
2KZV Chain:A ((1-66))
MPHKEKHPLQDMFTSAIEAVA-------RDSGWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDF--LTVQESRNGSKLHSEIRLRHDGLEHHHHHH--------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KZV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15089 for 333 contacts (-45.3/contact) +
2D Compatibility (PS) -6530 + (NN) -3512 + (LL) 6928
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -21553.0 ( -64.72 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_2KZV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KZV-query.scw
PDB file :
Tito_Scwrl_2KZV.pdb
: