Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANEVYANNMEISCKAANGKSIAAFPDVCFTPPQAPPTPLGVPIPYPNTGLSKDTTKGTRTIRITRKEVMLKNKSYYKTSYGDEPGRAPKKGIVTSKIKGKVYFTSWSMNVKFESKNVVRHLDLTTHNHASFPGNTPVWPY--LDQATVDAGGGPCS---NEVKKEKKDCADFKP----HGSKD--------ACAGLGAGKPSGK-------------------KTSNEADRLADKVAARKCLT---------ARRCALQPYKPNSCCPQQT--AHHLIEASALH------DKGRGGKGSVPLKGISNYSENKAPCVCAE-----GVNQNVGTHGLMHTFQSAAAAKSRSGTLQLSNGSSISAKKTTYGTAKRQSM-----AAMGKVFPQSKCSKECLSAQLDNYHKQCGINARTPIKAVETG--QTDVTAAT----QAIKTRNARLGATRSRVR-------------------------------------------------- |
| 4GA6 Chain:A ((1-493)) | MKAKIRILDM-FSGRYTVLINEEDAKEAKLHPDDLVKIEAGKKAVYGSVALSNLVGKG--EVGISRDVLDLHNFSEGETVSVIPAGTPESVRYIKKKMHGEKL-------RKVEIEAIVRDIVDRKLRDIEISSFVTALEINGLDMDEIAALTIAMAETGDMLDIDRKPIMDVHSIGGVPGNKTNILVVPIVAAAGLTIPKTSSRAITSAAGTADVVEVFADVSFSLDEIKRIVEKVGA--CLVWGGALNLAPADDITIKAERALSIDPTGLMLASIMSKKYAMGSQYVLIDIPTGKGVKVETVEEARSLARDFIELGKRLGQYVEVAITYGGQPIGHTVGPALEAREALSALMTGKGPGSLIEKATGLAGILLEMGGVAPAGTGKKMAKEILESGKAWEKMKEIIEAQGGDPNIKPEEIPIGDKTYTFTAATSGYVTAIDNRAITAIARAAGAPEDKGAGIELYVKVGEKVKEGDPLFTIHAEHEARLDQAIVLARRTEPIRIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GA6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 115343 for 2812 contacts (41.0/contact) +
2D Compatibility (PS) -37420 + (NN) 13855 + (LL) 832
1D Compatibility (HY) -5600 + (ID) 3750
Total energy: 83260.0 ( 29.61 by residue)
QMean score : 0.007
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