Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKCPY---Q----EVDGLDLV-GDTHHLMAWRDGQLLAYLRLLDPVR-------HEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLDTPVYLSAQAHLQAYYGRYGFVAVTEVYLEDDIPHIGMRRA
3MGD Chain:A ((3-144))
--------NYRKADMKDISLLVSIRKRQLIDEGIEPNIDIDKELTRYFNNKLANNLLVEWIAEENNQIIATAAIAFIDFPPTYTNKTGRKGYITNMYTEPTSRGNGIATGMLDRLVNEAKERNI-HKICLVASKLGRPVYKKYGFQDTDEWLELNLLEHH-----
General information:
TITO was launched using:
RESULT:
Template:
3MGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66455 for 872 contacts (-76.2/contact) +
2D Compatibility (PS) -13651 + (NN) -1671 + (LL) 752
1D Compatibility (HY) -4800 + (ID) 1100
Total energy: -86925.0 ( -99.68 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_3MGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MGD-query.scw
PDB file :
Tito_Scwrl_3MGD.pdb
: