Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAIYLAGPDVFRPDAEAHGETLKALCAEFGFVGLYPLDHALPADIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDAGAYAERLARLAPEWLGEHPGEDRDGWQLEGFGLPLNLMLAVPSRLVAGGPREALRRLAEELGGNA
4MEJ Chain:A ((95-150))
----------------------------------------------------------------------------------DDGSAFEIGFMRAMHKPVI---------------LVP--FTEHPEKEKK----------MNLMIAQGVTTIIDGNTE-FEKLADYNFNEC
General information:
TITO was launched using:
RESULT:
Template:
4MEJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15695 for 279 contacts (-56.3/contact) +
2D Compatibility (PS) -6070 + (NN) -3406 + (LL) 7528
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -23593.0 ( -84.56 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_4MEJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MEJ-query.scw
PDB file :
Tito_Scwrl_4MEJ.pdb
: