Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYEWLNALPKAELHLHLEGTLEPELLFALAERNRIALPWNDVETLRKAYAFN---NLQEFLDLY-YAGADVLRTEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGI-------------PFEVVLAGIRAALRDGEKLLGIRHGLILSFLRHLSEEQAQKTLDQALPFRD-AFIAVGLDSSEVGHPPSKFQ---RVFDRARSEGFLTVAHAGEEGPPEYIWEALDLLKVERIDHGVRAFEDERLMRRLIDEQIPLTVCPLSNTKLCVFDDMSQHTILDMLERGVKVTVNSDDPAYFGGYVTENFHALQQSLGMTEEQARRLAQNSLDARLVK |
| 1NDV Chain:A ((9-328)) | --------PKVELHVHLDGAIKPETILYYGKRRGIALPADTPEELQNIIGMDKPLTLPDFLAKFDYYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVV-SLVNQGLQEGERDFGVKVRSILCCMRH-QPSWSSEVVELCKKYREQTVVAIDLAGDETIEGSSLFPGHVQAYAEAVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYHTLEDTTLYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143628 for 2644 contacts (-54.3/contact) +
2D Compatibility (PS) -32062 + (NN) -14678 + (LL) 1328
1D Compatibility (HY) -19600 + (ID) 4150
Total energy: -212790.0 ( -80.48 by residue)
QMean score : 0.447
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