Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSFFHGVTVTNVDIGARTIALPASSVIGLCDVFTPGAQASAKPNVPVLLTSKKDAAAAFGIGSSIYLACEAIYNRAQAVIVAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNAQPRLLVAPGHSAQQAVATA--MDGLAEKLRAIAILDGPNSTDE--AAVAYAKNFGSKRLFMVDP---GVQVWDSATNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFLDGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLNSASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQWLTEVLDVA |
| 3PVA Chain:A ((1-334)) | CSSLSIRTTDDKSLFARTMDFTME-----------------PDSKVIIVPRNYGIRLLEKENVVI---------NNSYAFVGMGSTDITSPVLYDGVNEKGLMGAMLYYATFATYADEPK---KGTTGINPVYVISQVLGNCVTVDDVIEKLTSYTLLNEANIILGFAPPLHYTFTDASGESIVIEPDKTGITIHRKTIGVMTNSPG-------YEWHQTNLRAYIGVTPNPPQDIMMGDLDLTPFGQGAGGLGLPGDFTPSARFLRVAYWKKYTEKAKN------------ETEGVTNLFHILSSVNIPKGVVLTNEGKTDYTIYTSAMCAQSK--NYYFKLYDNSRISAVSLMAENLNSQDLITFEWDRKQDIKQLNQVNVM--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -36433 for 2689 contacts (-13.5/contact) +
2D Compatibility (PS) -35015 + (NN) -15989 + (LL) 4656
1D Compatibility (HY) -4400 + (ID) 1850
Total energy: -89031.0 ( -33.11 by residue)
QMean score : 0.127
|
|
|