Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIDTPPGFAVYPSASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLLQRFAQPLQGLEADRLELKAMLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQLARRELQVLIPLNGMLDNLVRNSHKLDLES
1VDK Chain:A ((29-86))
-------------------------------------------------LENFRIGT---DRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEIL
General information:
TITO was launched using:
RESULT:
Template:
1VDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2688 for 303 contacts (-8.9/contact) +
2D Compatibility (PS) -6558 + (NN) -6771 + (LL) 2648
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -16719.0 ( -55.18 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1VDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDK-query.scw
PDB file :
Tito_Scwrl_1VDK.pdb
: