Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMPE
1NXJ Chain:C ((34-182))
----TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV--------
General information:
TITO was launched using:
RESULT:
Template:
1NXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120938 for 1284 contacts (-94.2/contact) +
2D Compatibility (PS) -17095 + (NN) -12989 + (LL) 940
1D Compatibility (HY) -12400 + (ID) 3350
Total energy: -165832.0 ( -129.15 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_1NXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NXJ-query.scw
PDB file :
Tito_Scwrl_1NXJ.pdb
: