Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
4CV3 Chain:A ((2-256))
-GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGS--DIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN-PGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPI-----------------CEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMN-----
General information:
TITO was launched using:
RESULT:
Template:
4CV3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166816 for 2015 contacts (-82.8/contact) +
2D Compatibility (PS) -25843 + (NN) -10585 + (LL) 1332
1D Compatibility (HY) -28000 + (ID) 8250
Total energy: -238162.0 ( -118.19 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_4CV3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CV3-query.scw
PDB file :
Tito_Scwrl_4CV3.pdb
: