Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGRTVEDVDMLNHHFRVCSATVYRPPGDGCQSATSQPSAWWMAAKESRSGQLRRVEHVAFEGHPAAVLAGRAVEDRAVVGEADGQAEADVGSVLRGVQLAFEVQLEHARLDAFQADGDVRVVHGLAFAAALLGADGEGHGVSVHVLLQLAWGRRRQRGGQTTGRRAGWPVLAAVGAARGLGIIRRRRSPTAHHQPTPEGMMKLPVLAVLGAALLLSACAKKEAEACASPDVKDQLMRIFLQGAITERSPEFKDSALRDVAILEKDPDSGVLSCVGTLSVPAGQQVVEGVLQYRIAPVAKSDYDYLLLDTAGANTTALAQRLNKALGQ |
1MKM Chain:A ((4-249)) | --------------------------------MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG-----------FVLRKKDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGET-------------------------------VHLILKDGFEGVYIDKVEGEQSIPMVSRLGM-KVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITN-PRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGV-----ARKFTEEKIEEYSDVLKEKAEEISRKLGY |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71014 for 1936 contacts (-36.7/contact) +
2D Compatibility (PS) -27123 + (NN) -17387 + (LL) 4404
1D Compatibility (HY) -800 + (ID) 1400
Total energy: -113320.0 ( -58.53 by residue)
QMean score : 0.208
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