Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQFGAKPLFENVSVKFGNGNRYGLIGANGCGKSTFMKILGNDLEPS--AGQVMLEPNVRL--GKLRQDQFAYEDFSVIDTVIMGHEELWAVKAERDRIYSLPEMSEADGMAVAELEVQFAEFDGYTAESRAGELLLGLGIPLEQHFGPMSAVAPGWKLRVLLAQALFSDPDVLLLDEPTNHLDI----NTIRWLEGVLTARNSTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEYMTAAEQARERLLSDNAKKKAQIAELQSFVSRFSANASKAKQATSRARQIDKIQLEEVKPSSRVSPFIRFEQYKKLHRQA-VTVENISKGYDGKPLFKGLSLQVEAGERVAIIGPNGIGKTTLLRCLVGDLPVDGGEVKW--TDSADVGYFAQDHADDFADDMSLFDWMAQWTQGGEQLVRGTLGRMLFSNDEIKKSVKVISGGEQGRMLFGRLILKRPNVLVMDEPTNHLDMESIEALNLAL----DNYPGTLIFVSHDREFVSSLATRIIELGENGVTDFSGSYDDYLRSQGVIV |
| 1YQT Chain:A ((47-472)) | ------------------GMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL--LKKADETGKLEEVVKALELENV----------------LEREIQHLSG---GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR-LSEEGKSVLVVEHDLAVLDYL-SDIIHVVYGE----PGVYGIF-------------------SQPKGTRNGINEFLRGYLKDENVRFRPYEIK---------------FTKTGERVEIERETLVTYPRLVKDY-GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKID----ASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREGMNRF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YQT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123343 for 3278 contacts (-37.6/contact) +
2D Compatibility (PS) -43838 + (NN) -16125 + (LL) 6084
1D Compatibility (HY) -22000 + (ID) 5550
Total energy: -204772.0 ( -62.47 by residue)
QMean score : 0.329
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