Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGTRLKAARIRAGYSQKQLGMLVGMDEFSASARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDEL------AELILKVSSLTPEFKKELTRFIEQLLAAQGSTSRQPVRTRSEL
3IVP Chain:A ((12-116))
ALGLAIKEARKKQGLTREQVGAMIEIDPR----YLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLVIMESVADGIVKSKEVG-----------
General information:
TITO was launched using:
RESULT:
Template:
3IVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28788 for 567 contacts (-50.8/contact) +
2D Compatibility (PS) -11231 + (NN) -9321 + (LL) 980
1D Compatibility (HY) -5600 + (ID) 900
Total energy: -54860.0 ( -96.75 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_3IVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IVP-query.scw
PDB file :
Tito_Scwrl_3IVP.pdb
: