Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MRARGVNWIERSARILACASLALAPTLSLAASEEDPWESINRPIFTFNDTLDTYALKP---LAQGYQKVTPNFVQDGVHNFFNNLGDVKNLANNLLQ----AKFHNAGVDTSRLLFNSTFGLAGLIDVATPMGLQRNDEDFGQTLGYWGVGSGPYVMLPFLGPSTLRDAPAKIPDIYVSPYHYMDDVRARNVMFGINTVDTRANLLKSEKLISGDKYIFIRNAYLQNREFKVKDGEVEDDF------------------------ |
| 1RKE Chain:A ((-3-258)) | HMPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYT--KNLGPGMTKMAKMIDERQQELTHQEHRVML-----VNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAW |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 53791 for 1545 contacts (34.8/contact) +
2D Compatibility (PS) -23035 + (NN) 2552 + (LL) -176
1D Compatibility (HY) 13200 + (ID) 650
Total energy: 45682.0 ( 29.57 by residue)
QMean score : -0.063
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